Branislava Jankovic*, Aleksandr Matsun, Noël Malod-Dognin and Natasa Przulj
Mohamed Bin Zayed University of Artificial Intelligence
Contamination of the Toxoplasma gondii reference genome and an algorithm for its detection in paleometagenomic analysis
Sofia Dmitrienko1* and Artem Nedoluzhko2,3
1ITMO University
2Mammoth Museum, North-Eastern Federal University, Yakutsk, Russia
3National Research University Higher School of Economics, Moscow, 117418, Russia
A multi-omic digital twin network reveals C3-glycosylation as an actionable driver of latent metaflammation
Maxym Shmatkov1, Janko Diminic1, Jurica Zucko1, Olga Gornik2, Valentina Borko2, Toma Keser2, Andrija Karačić3, Robert Keser4 and Antonio Starcevic1*
1University of Zagreb Faculty of Food Technology and Biotechnology
2University of Zagreb Faculty of Pharmacy and Biochemistry
3Centar Mikrobiom d.o.o.
4In silico d.o.o.
DigestedProteinDB: A compact key–value database for in silico peptide digestion and mass-based search
Krešimir Križanović1, Janko Diminic2*, Antonio Starcevic2, Toni Čvrljak3 and Jurica Zucko2
1University of Zagreb Faculty of Electrical Engineering and Computing, Zagreb
2University of Zagreb Faculty of Food Technology and Biotechnology, Zagreb
3University of Zagreb Faculty of Mining, Geology and Petroleum Engineering, Zagreb, Croatia
Prothrombin reshapes the temporal transcriptomic trajectory of Caco-2 colorectal cancer cells
Marija Lazić*, Marija Cumbo Stikić, Aleksandra Vitkovac, Igor Davidović, Mateja Ilić, Marija Schwirtlich, Martina Mia Mitić, Branko Tomić and Valentina Đorđević
Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Serbia
Exploiting the linearity of joint embedding spaces to mine cancer precision medicine knowledge
Noël Malod-Dognin* and Nataša Pržulj
Mohamed bin Zayed University of Artificial Intelligence, United Arab Emirates
From fatty liver to scar: Exploring the rewiring of gene networks across the human chronic liver disease continuum.
Thomas Mohr*
Institute of Analytical Chemistry, University of Vienna
A pan-tissue multi-omics framework for aging analysis via non-negative matrix tri-factorization
Tarmo Nurmi, Natasa Przulj, Noel Malod, Stevan Milinkovic, Branislava Jankovic and Aleksandr Matsun*
Mohamed Bin Zayed University of Artificial Intelligence
Diet reconstruction of a woolly mammoth calf using multiple metagenomic approaches
Kseniia Poliakova1*, Maxim Cheprasov2, Gavril Novgorodov2, Alexandr Rakitko1,3, Fedor Sharko4 and Artem Nedoluzhko2,4,5
1Genotek Center: AI in Personalized Medicine, ITMO University, Saint Petersburg, Russia
2Mammoth Museum, North-Eastern Federal University, Yakutsk, Russia
3Genotek Ltd., Moscow, Russia
4European University at Saint Petersburg, Saint Petersburg, Russia
5National Research University Higher School of Economics, Moscow, 117418, Russia
Integrated analysis reveals bias in single-tool miRNA profiling during grapevine viral coinfection
Katja Jamnik*, Hana Šinkovec, Jernej Jakše, Vanja Miljanić and Nataša Štajner
Biotechnical faculty, University of Ljubljana, Slovenia